Applications: DNA Sequencing, Gene Regulation Analysis, Sequencing-Based Transcriptome Analysis, SNP Discovery and Structural Variation Analysis, Cytogenetic Analysis, DNA-Protein Interaction Analysis (ChIP-Seq), Sequencing-Based Methylation Analysis, Small RNA Discovery and Analysis
The HiSeq 2000 sequencing system offers unprecedented output and a breakthrough user experience. Leveraging Illumina's proven and widely-adopted, reversible terminator-based sequencing by synthesis chemistry in combination with innovative engineering, HiSeq 2000 delivers the industry's highest sequencing output and fastest data generation rate. Human interaction design features and the easiest sequencing workflow set a new standard for simplicity and user experience.
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With innovative design features, HiSeq 2000 is the easiest to use next-generation sequencing system.
Up to 200 Gb per run, 2 x 100 bp read length, up to 25 Gb per day, two billion paired-end reads/run.
Pre-configured, plug-and-play reagents, simple flow cell loading, touch screen-enabled user interface for step-by-step run setup, and integrated paired-end fluidics.
In a single run, sequence two human genomes at ~30x coverage for less than $10,000 (USD) per genome, or perform 200 gene expression profiles for less than $200 per sample.
HiSeq 2000 is the first commercially available sequencer to enable researchers to obtain ~30x coverage of two human genomes in a single run for under $10,000 (USD)* per sample.
HiSeq 2000 makes it possible for individual labs to take on the largest and most complex sequencing studies at the lowest cost. The ability to process larger numbers of samples and to decode larger and more complex genomes means that virtually any sequencing project is now within reach.
*Reagent costs at list price.


Illumina proudly offers system and analysis software designed to maximize your data quality and throughput level. Each instrument includes system control software designed for optimal performance. Data can be analyzed using Illumina's user-friendly GenomeStudio software or a third-party package.
Illumina's Customer Solutions Team is dedicated to providing you with the resources you need to support your research. Scientists specializing in Illumina's technologies, scientific applications, software, and hardware systems are available even before your first system purchase. Field Service Engineers expertly install and qualify your instrument to guarantee a fully functional system. Field Application Scientists offer extensive training, enabling labs to quickly become proficient at generating industry-leading data quality at unparalleled throughput levels. Technical Support Scientists are just a phone call or email away and can help you plan your project, diagnose a problem, and interpret results.
We strive to continuously exceed your expectations, so that you can maximize the impact of Illumina technology in your lab. For more information, visit our Support section